Baiz Group Publications

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  1. Kwang-Im Oh, Kavya Rajesh, John F. Stanton, and Carlos R. Baiz, “Quantifying Hydrogen-Bond Populations in Dimethyl Sulfoxide/Water Mixtures“, Angewandte Chemie, ASAP, (2017) [DOI: 10.1002/ange.201704162]
  2. Sean Coleman Edington, Jennifer C. Flanagan, and Carlos R. Baiz, “An Empirical IR Frequency Map for Ester C=O Stretching Vibrations“, J. Phys. Chem. A, ASAP (2016) [PDF]
  3. Xin-Xing Zhang, Kevin C. Jones, Ann Fitzpatrick, Chunte Sam Peng, Chi-Jui Feng, Carlos R. Baiz, and Andrei Tokmakoff, “Studying Protein-Protein Binding Through T-Jump Induced Dissociation: Transient 2D IR Spectroscopy of Insulin Dimer“, J. Phys. Chem. B, ASAP (2016) [PDF]Insulin_Paper_Abstract

Prior to UT:

  1. Paul Stevenson, Christoph Götz, Carlos R. Baiz, Jasper Akerboomf, Andrei Tokmakoff and Alipasha Vaziri, “Visualizing KcsA conformational changes upon ion binding by atomistic modeling of infrared spectroscopyJ. Phys. Chem. B, 118, 5824 (2015) [PDF]Stevenson_JPCA_2015
  2. Carlos R. Baiz, and Andrei Tokmakoff “Structural Disorder of Folded Proteins: Isotope-Edited 2D IR Spectroscopy and Markov State ModelingBiophys J. 108, 7, 1747 (2015) [PDF]Baiz_Biophys_J_2015
  3. Carlos R. Baiz, Denise Schach, and Andrei Tokmakoff, “Ultrafast 2D IR microscopy” Optics Express, 22, 18724 (2014) [PDF]Baiz_OptExp_2014
  4. Carlos R. Baiz, Yu-Shan Lin, Chunte Sam Peng, Kyle A. Beauchamp, Vincent A. Voelz, Vijay S. Pande, and Andrei Tokmakoff “A Molecular Interpretation of 2D IR Protein Folding Experiments with Markov State Models“, Biophysical Journal, 106, 1359 (2014) [PDF]Baiz_Biophys_J_2014
  5. Chunte Sam Peng, Carlos R. Baiz, Andrei Tokmakoff, “Direct observation of ground-state lactam-lactim tautomerization using temperature-jump transient 2D IR spectroscopy”, Proc. Nat. Acad. Sci. 110, 9243-9248 (2013) [PDF]Peng_PNAS_2013
  6. Bowu Luan, Bing Shan, Carlos R. Baiz, Andrei Tokmakoff, and Daniel P. Raleigh, “Cooperative Cold Denaturation: The Case of the C-Terminal Domain of Ribosomal Protein L9”, Biochem. 52, 2402-2409 (2013) [PDF]Luan_Biochem_2013
  7. Carlos R. Baiz, Mike Reppert, and Andrei Tokmakoff, “Amide I Two-Dimensional Infrared Spectroscopy: Methods for Visualizing the Vibrational Structure of Large Proteins”, J. Phys. Chem. A.  117, 5955-5961 (2013) [PDF]Baiz_JPCA_2013
  8. Jessica M. Anna, Carlos R. Baiz, Matthew R. Ross, Robert McCanne, and Kevin J. Kubarych,  Ultrafast equilibrium and non-equilibrium chemical reaction dynamics probed with multidimensional infrared spectroscopy, Int. Rev. Phys. Chem. 3, 367 (2012) [PDF]Anna_IntRevPhysChem_2012
  9. Carlos R. Baiz, Chunte S. Peng, Michael E. Reppert, Kevin C. Jones, and Andrei Tokmakoff, “Coherent two-dimensional infrared spectroscopy: Quantitative analysis of protein secondary structure in solution”, Analyst, 137, 1793-1799 (2012) [PDF]Baiz_Analyst_2012
  10. Carlos R. Baiz, Kevin J. Kubarych, Eitan Geva and Edwin L. Sibert III, “Local-mode approach to modeling multidimensional infrared spectra of metal carbonyls”,  J. Phys. Chem. A. 115 (21), 5354 ,(2011) [PDF]Baiz_JPCA_2011
  11. Carlos R. Baiz, Kevin J. Kubarych, and Eitan Geva, “Molecular Theory and Simulation of Coherence Transfer in Metal Carbonyls and Its Signature on Multidimensional Infrared Spectra” J. Phys. Chem. B, 115, (18) , 5322, (2011) [PDF]Baiz_JPCA_2010
  12. Carlos R. Baiz, and Kevin J. Kubarych and Eitan Geva, “Ultrabroadband Detection of an Infrared Continuum by Chirped-Pulse Upconversion” Optics Letters, 36 (2) 187, (2011) [PDF]Baiz_OptLett_2011
  13. John T. King, Carlos R. Baiz and Kevin J. Kubarych. “Solvent-Dependent Spectral Diffusion in a Hydrogen Bonded “Vibrational Aggregate”” J. Phys. Chem. A. 114 (39) 10590 (2010) [PDF]King_JPCA_2010
  14. Carlos R. Baiz and Kevin J. Kubarych, “Ultrafast Transient Vibrational Stark Spectroscopy: Exploring Excited-State Charge-Transfer by Measuring the Solvent Response”,  J. Amer. Chem. Soc (Comm), 132 (37), 12784-12785 (2010) [PDF]Baiz_JACS_2010
  15. Carlos R. Baiz, Robert McCanne, and Kevin J. Kubarych, “Transient vibrational echo versus transient absorption spectroscopy: A direct experimental and theoretical comparison”, Applied Spectroscopy, 64 (9) 1037-1044 (2010) [PDF]Baiz_ApplSpec_2010
  16. Jessica. M. Anna, Matthew. J. Nee, Carlos. R. Baiz, Robert. McCanne, Kevin. J. Kubarych, “Measuring Absorptive Two-Dimensional Infrared Spectra Using Chirped-Pulse Upconversion Detection”,  J. Opt. Soc. Am. B, 27, 382-393 (2010) [PDF]Anna_JOSAB_2010
  17. Carlos R. Baiz, Robert McCanne, and Kevin J. Kubarych, “Structurally Selective Geminate Rebinding Dynamics of Solvent-Caged Radicals Studied with Nonequilibrium Infrared Echo Spectroscopy”, J. Amer. Chem. Soc, 131 (38), 13590, (2009) [PDF]Baiz_JACS_2009
  18. Carlos R. Baiz, Porscha L. McRobbie, Nicholas K. Preketes, Kevin J. Kubarych, and Eitan Geva, “Two-Dimensional Infrared Spectroscopy of Dimanganese Decacarbonyl and Its Photoproducts: An Ab Initio Study”, J. Phys. Chem. A, 113, (35), 9617, (2009) [PDF]Baiz_JPCA_2009_3
  19. Carlos R. Baiz, Robert McCanne, Matthew J. Nee, and Kevin J. Kubarych, “Orientational dynamics of transient molecules measured by non-equilibrium two-dimensional infrared spectroscopy”,  J. Phys. Chem A, 113 (31), 8907, (2009) [PDF]Baiz_JPCA_2009_2
  20. Carlos R. Baiz, Porscha L. McRobbie, Jessica M. Anna, Eitan Geva, and Kevin J. Kubarych, “Two-dimensional Spectroscopy of Metal Carbonyls”,  Accounts of Chemical Research, 42, (9), 1395, (2009) [PDF]Baiz_AccChemRes_2009
  21. Carlos R. Baiz, Sarah J. Ledford, Kevin J Kubarych, and Barry D. Dunietz, “Beyond 7-Azaindole:  Conjugation Effects on Intermolecular Double Hydrogen-atom Transfer Reactions”, J. Phys. Chem A., 113 (17), 4862, (2009) [PDF]Baiz_JPCA_2009
  22. Carlos R. Baiz, Matthew J. Nee, Robert McCanne, and Kevin J. Kubarych, “Ultrafast non-equilibrium Fourier-transform two-dimensional infrared spectroscopy”, Optics Letters, 33, 2533, (2008) [PDF]

    Baiz_OptLett_2008
  23. Matthew J. Nee, Carlos R. Baiz, Jessica M. Anna, Robert McCanne, and Kevin J. Kubarych, “Multilevel vibrational coherence transfer and wavepacket dynamics probed with multidimensional IR spectroscopy”, J. Chem. Phys. 129, 084503. (2008) [PDF]Nee_JCP_2008
  24. Carlos R. Baiz and Barry D. Dunietz, “Theoretical Studies of Conjugation Effects on Excited State Intramolecular Hydrogen-Atom Transfer Reactions in Model Systems”, J. Phys. Chem. A, 111 (40), 10139, (2007) [PDF]Baiz_JPCA_2007

Book Chapter

  1. Carlos R. Baiz, Mike E. Reppert, and Andrei Tokmakoff, “An Introduction to Protein 2D IR Spectroscopy“, Ultrafast Infrared Vibrational Spectroscopy, Edited by Michael D. Fayer CRC Press, ISBN: 1466510137, (2013) [PDF]Baiz_BookChapter_2013